Some Commonly Used Bioinformatics Software
Here are some of the bioinformatics software I have used and my experience at using that. The page is still in construction, and I will add more information about them.
Cell2loc is used to deconvolution the spatial transcriptomics data. It enables us to investigate the cell proportion in a spatially resolved manner
Tangram is also a great tool for the spatial deconvolution.
A commonly used tool for the single-cell analysis. Basically doing anything. Many tools also based on
that. It seems that Seurat is better known than Georges Pierre Seurat
Like Seurat. Also commonly used in single cell analysis. Many tools like Tangram are based on it.
For aligning cells in trajectories.Predict the gene expression level (imputation) in spatial transcriptomics data.
Bioconductor package for differential gene analysis for bulk RNA-seq data.